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A surface plasmon resonance system for the underwater detection of domoic acid ArchiMer
Colas, Florent; Crassous, Marie-pierre; Laurent, Sebastien; Litaker, Richard W.; Rinnert, Emmanuel; Le Gall, Erwan; Lunven, Michel; Delauney, Laurent; Compère, Chantal.
Over the past decade Surface Plasmon Resonance (SPR) techniques have been applied to the measurement of numerous analytes. In this article, an SPR biosensor system deployed from an oceanographic vessel was used to measure dissolved domoic acid (DA), a common and harmful phycotoxin produced by certain microalgae species belonging to the genus Pseudo-nitzschia. During the biosensor deployment, concentrations of Pseudo-nitzschia cells were very low over the study area and measured DA concentrations were below detection. However, the in situ operational detection limit of the system was established using calibrated seawater solutions spiked with DA. The system could detect the toxin at concentrations as low as 0.1 ng mL−1 and presented a linear dynamic range...
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Ano: 2016 URL: http://archimer.ifremer.fr/doc/00324/43481/42921.pdf
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Chalcogenide Glass Optical Waveguides for Infrared Biosensing ArchiMer
Anne, Marie-laure; Keirsse, Julie; Nazabal, Virginie; Hyodo, Koji; Inoue, Satoru; Boussard-pledel, Catherine; Lhermite, Herve; Charrier, Joel; Yanakata, Kiyoyuki; Loreal, Olivier; Le Person, Jenny; Colas, Florent; Compere, Chantal; Bureau, Bruno.
Due to the remarkable properties of chalcogenide (Chg) glasses, Chg optical waveguides should play a significant role in the development of optical biosensors. This paper describes the fabrication and properties of chalcogenide fibres and planar waveguides. Using optical fibre transparent in the mid-infrared spectral range we have developed a biosensor that can collect information on whole metabolism alterations, rapidly and in situ. Thanks to this sensor it is possible to collect infrared spectra by remote spectroscopy, by simple contact with the sample. In this way, we tried to determine spectral modifications due, on the one hand, to cerebral metabolism alterations caused by a transient focal ischemia in the rat brain and, in the other hand, starvation...
Tipo: Text Palavras-chave: Planar waveguide; Fibre; Optical sensor; Chalcogenide.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6851.pdf
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Comparison of adhesion layers of gold on silicate glasses for SERS detection ArchiMer
Colas, Florent; Barchiesi, D.; Kessentini, S.; Toury, T.; De La Chapelle, M. Lamy.
Gold is one of the most widely used metals for building up plasmonic devices. Although slightly less efficient than silver for producing sharp resonance, its chemical properties make it one of the best choices for designing sensors. Sticking gold on a silicate glass substrate requires an adhesion layer, whose effect has to be taken into account. Traditionally, metals (Cr or Ti) or dielectric materials (TiO2 or Cr2O3 ) are deposited between the glass and the nanoparticle. Recently, indium tin oxide and (3-mercaptopropyl)trimethoxysilane (MPTMS) were used as a new adhesion layer. The aim of this work is to compare these six adhesion layers for surface- enhanced Raman scattering sensors by numerical modeling. The near-field and the far-field optical responses...
Tipo: Text Palavras-chave: Surface-enhanced raman scattering; Adhesion layer; Nanocylinder; Discrete dipole approximation.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00298/40907/40083.pdf
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Design, Characterization, and Test of a Versatile Single-Mode Power-Over-Fiber and Communication System for Seafloor Observatories ArchiMer
Diouf, Cherif; Quintard, Veronique; Ghisa, Laura; Guegan, Mikael; Perennou, Andre; Gautier, Laurent; Tardivel, Morgan; Barbot, Stephane; Dutreuil, Vincent; Colas, Florent.
A power-over-fiber (PoF) and communication system for extending a cabled seafloor observatory is demonstrated in this contribution. The system allows the cabled seafloor observatory to be linked, through a single optical fiber, to a sensor node located 8 km away. The PoF system is based on an optical architecture in which power and data propagate simultaneously on the same single-mode fiber. The Raman scattering effect is exploited to amplify the optical data signals and leads to the minimization of the sensor node power consumption. Versatile low power electronic interfaces have been developed to ensure compatibility with a wide range of marine sensors. A low-consumption field-programmable gate array and an energy-efficient microcontroller are used to...
Tipo: Text Palavras-chave: Low power embedded systems; Power-over-fiber (PoF); Raman amplification; Remote sensing; Seafloor observatories.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00465/57684/59933.pdf
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Development of microbial and molecular sensors ArchiMer
Boccadoro, Catherine; Karlson, Bengt; Colas, Florent.
The aim of Task 3.4 was to develop and test innovative methods for the molecular detection of phytoplankton, harmful algal blooms and pollutants through their effect on microbial communities. This included the development of novel molecular sensors for the detection, quantification and identification of organisms, microbial markers of pollutant exposure or toxin concentrations in marine coastal waters. Bacterial species and genes which can be used as markers of high nutrient load or hydrocarbon contamination in the marine environment were identified through bacterial community analysis in contaminated environments and literature reviews. Assays using quantitative Polymerase Chain Reaction (qPCR) for the quantification of these organisms were developed and...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00630/74246/73876.pdf
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Effect of plasmonic mode on plasmon-based lasers ArchiMer
Dridi, Montacer; Colas, Florent; Compere, Chantal.
For the last few years, plasmon-based lasers have been investigated theoretically and experimentally. Several configurations have been reported. They are composed of quantum emitters coupled to a plasmonic structure. In this paper, we investigate the effect of the plasmon mode on the far-field and near-field characteristics of a nanolaser composed by a periodic array of metallic nanoparticles covered by gain materials under optical pumping. Two configurations were investigated. The first structure supported a localized surface plasmon (LSP) mode, while the second a surface lattice plasmon (SLP) mode. This theoretical work relies on semi-quantum calculations based on a four-level gain molecule and a time-domain approach. We demonstrated that lasing in a SLP...
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Ano: 2018 URL: https://archimer.ifremer.fr/doc/00473/58490/61054.pdf
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Finalisation d’un outil préopérationnel FlowCAM / ZooPhytoImage. Action9 - FlowCAM ZooPhytoImage. Livrable n° 3. Rapport final ArchiMer
Wacquet, Guillaume; Lefebvre, Alain; Colas, Florent; Grosjean, Philippe.
Today, the most widely used method for the analysis of samples within the REPHY network, is the microscopy. However, this method has several drawbacks: different skill level depending on the analyst, taxa may be misidentified, analyst subject to fatigue and loss of concentration, non-quantifiable errors. That is why different axis of development have been proposed to adapt the FlowCAM and ZooPhytoImage to the requirements of REPHY network which are the accuracy and repeatability of the measurement. The purpose of these new tools being to provide a tangible gain of time for analysts compared to the observations with optical microscope. The analysis time being a key point of this system, studies were conducted in order to achieve a fast acquisition. To have...
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Ano: 2014 URL: http://archimer.ifremer.fr/doc/00363/47440/47465.pdf
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First Steps of in Situ Surface-Enhanced Raman Scattering During Shipboard Experiments ArchiMer
Peron, Olivier; Rinnert, Emmanuel; Colas, Florent; Lehaitre, Michel; Compere, Chantal.
It is shown that the surface-enhanced Raman scattering (SERS) technique can be applied to detect organic molecules during in situ experiments. To this purpose, we used trans-1,2-bis(4-pyridyl)ethylene (BPE) as a target molecule. Adsorbed on the SERS chemosensor surface and excited under laser, the vibration modes of the molecules can be identified. SERS chemosensors are based on quartz substrates functionalized by silanization and partially coated with gold nanoparticles. SERS measurements during shipboard experiments were made with a home-made in situ Raman spectrometer connected to a marinized micro-fluidic system. The device was designed to host chemosensors in order to ensure measurements with a flow cell. A theoretical limit of detection was estimated...
Tipo: Text Palavras-chave: Surface-enhanced Raman scattering; SERS; Chemosensors; Flow cells; Shipboard experiments; In situ measurements; Freundlich isotherm.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00016/12691/9718.pdf
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JERICO-NEXT. Progress report after development of microbial and molecular sensors. D3.7 ArchiMer
Boccadoro, Catherine; Petersen, Wilhelm; Karlson, Bengt; Colas, Florent.
This progress report includes the work performed during the first two years of the project. During this first phase of the project, much of the focus has been on the development and improvements of the different types of sensors and biosensors before the sensor testing through laboratory and field campains, which will involve sensor tests in a common setting and integration of the results and responses from the different devices and tools.
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Ano: 2017 URL: http://archimer.ifremer.fr/doc/00423/53432/54320.pdf
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Nanoplasmonics tuned “click chemistry” ArchiMer
Tijunelyte, I.; Guenin, E.; Lidgi-guigui, N.; Colas, Florent; Ibrahim, J.; Toury, T.; Lamy De La Chapelle, M..
Nanoplasmonics is a growing field of optical condensed matter science dedicated to optical phenomena at the nanoscale level in metal systems. Extensive research on noble metallic nanoparticles (NPs) has emerged within the last two decades due to their ability to keep the optical energy concentrated in the vicinity of NPs, in particular, the ability to create optical near-field enhancement followed by heat generation. We have exploited these properties in order to induce a localised “click” reaction in the vicinity of gold nanostructures under unfavourable experimental conditions. We demonstrate that this reaction can be controlled by the plasmonic properties of the nanostructures and we propose two physical mechanisms to interpret the observed plasmonic...
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Ano: 2016 URL: https://archimer.ifremer.fr/doc/00368/47954/48018.pdf
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New Approach For The Detection Of Toxic Algae Species ArchiMer
Colas, Florent; Crassous, Marie-pierre; Laurent, Sebastien; Dreanno, Catherine; Compere, Chantal.
Up to now, toxic species are monitored by expensive and time-consuming laboratory analysis of seawater samples: after a 24h decantation, the samples are observed with an optical microscope and the cell concentration per species is determined. In this context, systems able to detect HAB species directly underwater would be of great help. An assay based on an SPR biosensor was then developed for detecting Alexandrium minutum.
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Ano: 2010 URL: http://archimer.ifremer.fr/doc/00089/19995/17658.pdf
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Optimisation de l’identification et du dénombrement du microphytoplancton avec le système couplé de numérisation et d’analyse d’images FlowCAM – Zoo/PhytoImage (système innovant). Action 9 – Livrable 3. Evolution du matériel de numérisation : prototype FastCAM et perspectives. Rapport final, février 2016 ArchiMer
Colas, Florent; Tardivel, Morgan; Evrard, Justine; Forest, Bertrand; Crassous, Marie-pierre; Lunven, Michel; Danielou, Marie-madeleine.
This deliverable contains all development work of the FastCAM, new tool for fast imaging of the phytoplankton, which took place in 2015. It consists of: One report of the FastCAM and its comparison with the FlowCAM presentation: The FlowCAM enables the digitalization of a sample of phytoplankton with X10 and X 4 magnifications. The first allows a better morphological description and therefore a higher taxonomic resolution but with a longer scan time (16 X). Thus, for routine analyses, only scanning at 4 X is possible. A considerable gain would be able to do an acquisition to the magnification 10 X with a time of analysis more short, comparable to 4 X. A fast flow imaging system has therefore developed in this sense. He was called FastCAM. The system is...
Tipo: Text Palavras-chave: FlowCAM; FastCAM; Imagerie rapide; Phytoplancton; REPHY.; FlowCAM; FastCAM; Fast imaging; Phytoplankton; REPHY.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00363/47420/47425.pdf
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Organometallic nanoprobe to enhance optical response on Polycyclic Aromatic Hydrocarbons (PAHs) immunoassay using SERS technology ArchiMer
Dribek, Mohamed; Rinnert, Emmanuel; Colas, Florent; Crassous, Marie-pierre; Compere, Chantal.
We demonstrate the possible use of organometallic nanoprobe on competitive surface-enhanced Raman scattering immunoassay for policyclic aromatic hydrocarbon detection in sea water. This type of SERS immunoassay is based on to capture Raman reporter-labeled immuno-Au onto the immobilized layer of antigens (benzo[a]pyrene) on the gold substrate after incubation of these nanoprobes with PAHs including in the sample. To realize nanoprobes, first we have prepared gold nanoparticles (GNPs) according to Frens’ method. Then, we have labeled GNPs by the Raman reporter of 5,5’-Dithiobis(succinimidyl-2-nitrobenzoate) (DSNB). Thereafter, Benzo[a]pyrene antibody was attached to the DSNB labeled GNPs. Before use in SERS detection, their activity was controlled by...
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Ano: 2012 URL: http://archimer.ifremer.fr/doc/00088/19912/17576.pdf
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Organometallic nanoprobe to enhance optical response on the polycyclic aromatic hydrocarbon benzo[a]pyrene immunoassay using SERS technology ArchiMer
Dribek, Mohamed; Rinnert, Emmanuel; Colas, Florent; Crassous, Marie-pierre; Thioune, Nene; David, Catalina; De La Chapelle, Marc; Compere, Chantal.
We demonstrated the use of a new organometallic nanoprobe for competitive surface-enhanced Raman scattering (SERS) immunoassay devoted to the detection of polycyclic aromatic hydrocarbons (PAH) such as benzo[a]pyrene (BaP) in seawater. The nanoprobes are gold nanoparticles (GNPs) labeled by a Raman reporter, the 5,5'-dithiobis(succinimidyl-2-nitrobenzoate) (DSNB) and functionalized with monoclonal antibodies anti-BaP. The antibodies are bound with a high specificity to the analyte while the GNPs enhanced the Raman scattering of the DSNB. This type of immunoassay involved the grafting of BaP onto a sensing surface. Thus, NH2-terminated self-assembled monolayer is formed on the surface of gold substrate using cysteamine. Amines finally reacted with...
Tipo: Text Palavras-chave: Biosensor; Surface-enhanced Raman scattering; Polycyclic aromatic hydrocarbons; Benzo[a]pyrene antibody; Organometallic nanoprobe.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00417/52844/53870.pdf
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Plasmonic Properties of Aluminum Nanocylinders in the Visible Range ArchiMer
Gillibert, Raymond; Colas, Florent; Yasukuni, Ryohei; Picardi, Gennaro; Lamy De La Chapelle, Marc.
Plasmonic and surface enhanced Raman scattering (SERS) studies have been performed on aluminium nanocylinders arrays of different diameters. We observed sharps localised surface plasmon resonance (LSPR) peaks that can be tuned on the whole visible range and having the same behaviour than gold nanocylinders. The near-field enhancement was measured by SERS on probe molecules as well as on the indium tin oxide (ITO) substrate using two excitation wavelengths: 660 and 785 nm. No SERS signal of the probe molecul
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Ano: 2017 URL: http://archimer.ifremer.fr/doc/00367/47865/47861.pdf
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Propriétés optiques et thermoplasmoniques de réseaux de nanocylindres: applications à la détection de molécules et de micro-objets ArchiMer
Colas, Florent.
Raman spectroscopy is a technique that is non-invasive, non-destructive, allowing the identification of the molecules contained in a solid, liquid or gaseous sample. However it suffers from one major drawback : low sensitivity. This limit is now about to be pushed through the fast growth of SERS (Surface Enhanced Raman Scattering). This phenomenon has been already implemented successfully in various applications : biomedical, biology, analytical chemistry, environmental science... However, despite a growing number of scientific works, some aspects of the SERS sensors still need to be studied. This work focused on the study of the near-field and the far-field properties of arrays of nanocylinders for the detection of organic compounds. The studied parameters are...
Tipo: Text Palavras-chave: Plasmon de surface; Diffusion raman exaltee de surface; Champ proche; Champ lointain; Nanocylindres; Thermoplasmonique; Pinces optiques.; Surface plasmon; Near-field; Far-field; Nanocylinder; Thermoplasmonic; Surface enhanced raman scattering; Optical tweezers..
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00620/73191/72385.pdf
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Red-Shift Effects in Surface Enhanced Raman Spectroscopy: Spectral or Intensity Dependence of the Near-Field? ArchiMer
Colas, Florent; Cottat, Maximilien; Gillibert, Raymond; Guillot, Nicolas; Djaker, Nadia; Lidgi-guigui, Nathalie; Toury, Timothee; Barchiesi, Dominique; Toma, Andrea; Di Fabrizio, Enzo; Gucciardi, Pietro G.; De La Chapelle, Marc Lamy.
Optimum amplification in Surface Enhanced Raman Scattering (SERS) from individual nanoantennas is expected when the excitation is slightly blue-shifted with respect to the Localized Surface Plasmon Resonance (LSPR), so that the LSPR peak falls in the middle between the laser and the Stokes Raman emission. Recent experiments have shown when moving the excitation from the visible to the near-infrared that this rule of thumb is no more valid. The excitation has to be red-shifted with respect to the LSPR peak, up to 80nm, to obtain highest SERS. Such discrepancy is usually attributed to a Near-Field (NF) to Far-Field (FF) spectral shift. Here we critically discuss this hypothesis for the case of gold nanocylinders. By combining multi-wavelength excitation SERS...
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Ano: 2016 URL: https://archimer.ifremer.fr/doc/00341/45234/44668.pdf
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RF sputtered amorphous chalcogenide thin films for surface enhanced infrared absorption spectroscopy ArchiMer
Verger, F.; Nazabal, V.; Colas, Florent; Nemec, P.; Cardinaud, C.; Baudet, E.; Chahal, R.; Rinnert, Emmanuel; Boukerma, Kada; Peron, Isabelle; Deputier, S.; Guilloux-viry, M.; Guin, J. P.; Lhermite, H.; Moreac, A.; Compere, Chantal; Bureau, Bruno.
The primary objective of this study is the development of transparent thin film materials in the IR enabling strong infrared absorption of organic compounds in the vicinity of metal nanoparticles by the surface plasmon effect. For developing these optical micro-sensors, hetero-structures combining gold nanoparticles and chalcogenide planar waveguides are fabricated and adequately characterized. Single As2S3 and Ge25Sb10Se65 amorphous chalcogenide thin films are prepared by radio-frequency magnetron sputtering. For the fabrication of gold nanoparticles on a chalcogenide planar waveguide, direct current sputtering is employed. Fabricated single layers or hetero-structures are characterized using various techniques to investigate the influence of deposition...
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Ano: 2013 URL: http://archimer.ifremer.fr/doc/00170/28094/26679.pdf
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Surface enhanced infrared absorption (SEIRA) spectroscopy using gold nanoparticles on As2S3 glass ArchiMer
Verger, F.; Pain, T.; Nazabal, V.; Boussard-pledel, C.; Bureau, Bruno; Colas, Florent; Rinnert, Emmanuel; Boukerma, Kada; Compere, Chantal; Guilloux-viry, M.; Deputier, S.; Perrin, A.; Guin, J. P..
The development of infrared sensing platform requires adapted materials. In this work, we used sputtered gold nanoparticles on a chalcogenide glass to demonstrate that these infrared materials can be used as substrate for surface enhanced infrared absorption (SEIRA) spectroscopy. The sputtering parameters were optimized to get the highest possible enhancement. To assess it, a self-assembled monolayer of 4-nitrothiophenol was used. These preliminary results are promising and pave the way for various configurations of waveguide for integrated optical components. (C) 2012 Elsevier B.V. All rights reserved.
Tipo: Text Palavras-chave: Chalcogenide glass; Sputtering; Gold nanoparticles; 4-Nitrothiophenol; SEIRA; Surface enhanced infrared absorption.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00116/22748/20613.pdf
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Surface plasmon resonance in chalcogenide glass-based optical system ArchiMer
Le Person, Jenny; Colas, Florent; Compere, Chantal; Lehaitre, Michel; Anne, M; Boussard Pledel, C; Bureau, B; Adam, J; Deputier, S; Guilloux Viry, M.
The surface plasmon resonance phenomenon has been studied in a chalcogenide glass-based optical system. IR transmission properties of these materials combined to their high refractive indices lead to advantageous properties for sensing. In this study, numerical simulations have been carried out to investigate the potentialities of sulfide glass from the GeGaSbS system as a coupling prism material. Then, an angular modulation SPR biosensor has been set up in the Kretschmann-Raether arrangement. Experimental data are consistent with numerical calculation and the detection limit of the sensor is 3 x 10(-5) RIU. These preliminary results are promising. Further investigations have to be carried out to confirm the great potentialities of those materials for...
Tipo: Text Palavras-chave: Infrared; Biosensor; Surface plasmon resonance; Chalcogenide glass.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-3955.pdf
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